--[[*************************************************************************
This module provides support to the automated taxobox system – the templates
Automatic taxobox, Speciesbox, Subspeciesbox, Infraspeciesbox, etc.
In particular it provides a way of traversing the taxonomic hierarchy encoded
in taxonomy templates (templates with names of the form
"Template:Taxonomy/TAXON_NAME") without causing template expansion depth
errors.
*****************************************************************************]]
require('Module:No globals')
local TaxonItalics = require('Module:TaxonItalics') -- use a function from Module:TaxonItalics to italicize a taxon name
local p = {} -- functions made public
local l = {} -- internal functions, kept separate
local colour = '' -- colour for taxobox and taxonomy listings
--[[=========================================================================
Limit the maximum depth of a taxonomic hierarchy that can be traversed;
avoids excessive processing time and protects against incorrectly set up
hierarchies, e.g. loops.
The value can be obtained externally via
{{#invoke:Autotaxobox|getMaxSearchLevels}}
=============================================================================]]
local MaxSearchLevels = 100
function p.getMaxSearchLevels()
return MaxSearchLevels
end
--[[========================== taxoboxColour ================================
Determines the correct colour for a taxobox, by searching up the taxonomic
hierarchy from the supplied taxon for the first taxon (other than
'incertae sedis') that sets a taxobox colour. It is assumed that a valid
taxobox colour is defined using CSS rgb() syntax.
If no taxon that sets a taxobox colour is found, then 'transparent' is
returned unless the taxonomic hierarchy is too deep, when the error colour is
returned.
Usage: {{#invoke:Autotaxobox|taxoboxColour|TAXON}}
=============================================================================]]
function p.taxoboxColour(frame)
-- note that colour is global to this function; default is empty string
local currTaxon = frame.args[1] or ''
local i = 1 -- count levels processed
local searching = currTaxon ~= '' -- still searching for a colour?
local foundICTaxon = false -- record whether 'incertae sedis' found
while searching and i <= MaxSearchLevels do
local plainCurrTaxon = l.stripExtra(currTaxon) -- remove trailing text after /
if string.lower(plainCurrTaxon) == 'incertae sedis' then
foundICTaxon = true
else
local possibleColour = frame:expandTemplate{ title = 'Template:Taxobox colour', args = { plainCurrTaxon } }
if string.sub(possibleColour,1,3) == 'rgb' then
colour = possibleColour
searching = false
end
end
if searching then
local ok, parent = l.getTaxonInfoItem(frame, currTaxon, 'parent')
if ok and parent ~= '' then
currTaxon = parent
i = i + 1
else
searching = false -- run off the top of the hierarchy or tried to use non-existent taxonomy template
end
end
end
if colour == '' then
if foundICTaxon then
colour = frame:expandTemplate{ title = 'Template:Taxobox colour', args = { 'incertae sedis' } }
elseif searching then
-- hierarchy exceeds MaxSearchLevels levels
colour = frame:expandTemplate{ title = 'Template:Taxobox/Error colour', args = { } }
else
colour = 'transparent'
end
end
return colour
end
--[[= = = = = = = = = = = = = topLevelTaxon = = = = = = = = = = = = = = = =
Defines the correct top level taxa, one of which should terminate every
taxonomic hierarchy encoded in taxonomy templates.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.topLevelTaxon(taxon)
return taxon == 'Life' or taxon == 'Veterovata' or taxon == 'Ichnos'
end
--[[=========================== taxoboxList =================================
Returns the rows of taxa in an automated taxobox, based on the taxonomic
hierarchy for the supplied taxon.
Usage:
{{#invoke:Autotaxobox|taxoboxList|TAXON
|display_taxa = the number of taxa *above* TAXON to force to be displayed
|authority = taxonomic authority for TAXON
|parent_authority = taxonomic authority for TAXON's parent
|gparent_authority = taxonomic authority for TAXON's grandparent
|ggparent_authority = taxonomic authority for TAXON's greatgrandparent
|ggparent_authority = taxonomic authority for TAXON's greatgreatgrandparent
|bold_first = 'bold' to bold TAXON in its row
|virus = 'yes' to apply virus taxa italicization standards
}}
=============================================================================]]
function p.taxoboxList(frame)
local currTaxon = frame.args[1] or ''
if currTaxon == '' then return '' end
local displayN = (tonumber(frame.args['display_taxa']) or 1) + 1
local authTable = {}
authTable[1] = frame.args['authority'] or ''
authTable[2] = frame.args['parent_authority'] or ''
authTable[3] = frame.args['gparent_authority'] or ''
authTable[4] = frame.args['ggparent_authority'] or ''
authTable[5] = frame.args['gggparent_authority'] or ''
local boldFirst = frame.args['bold_first'] or 'link' -- values 'link' or 'bold'
local virus = frame.args['virus'] or 'no' -- values 'yes' or 'no'
local offset = tonumber(frame.args['offset'] or 0)
-- adjust the authority table if 'authority' refers to a rank lower than the target taxon
if offset ~= 0 then
for i = 1, 5 do
local j = i + offset
if j <= 5 then
authTable[i] = authTable[j]
else
authTable[i] = ''
end
end
end
local taxonTable, taxonRankTable = l.makeTable(frame, currTaxon)
local res = ''
local topTaxonN = taxonTable.n
-- display all taxa above possible greatgreatgrandparent, without authority
for i = topTaxonN, 6, -1 do
res = res .. l.showTaxon(frame, taxonTable[i], taxonRankTable[i], topTaxonN==i, '', displayN >= i, '', virus)
end
-- display all taxa above possible parent, with authority if given
for i = math.min(topTaxonN, 5), 2, -1 do
res = res .. l.showTaxon(frame, taxonTable[i], taxonRankTable[i], topTaxonN==i, authTable[i], displayN >= i, '', virus)
end
-- display target taxon, always displayed and emboldened
res = res .. l.showTaxon(frame, taxonTable[1], taxonRankTable[1], topTaxonN==1, authTable[1], true, boldFirst, virus)
return res
end
--[[= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
Show one taxon row in a taxobox.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.showTaxon(frame, taxon, rank, isTopTaxon, auth, force, boldFirst, virus)
-- it's an error if this is the top taxon and it's not a top level taxon (e.g. "Life")
if isTopTaxon then
if l.topLevelTaxon(taxon) then
return '' -- don't display a top level taxon
elseif mw.title.new('Taxonomy/'..taxon, 'Template').exists then
-- taxonomy template for this taxon has no parent specified
return frame:expandTemplate{ title = 'Template:Create taxonomy', args = {taxon, msg='Taxonomy template does not specify a parent'} } .. '\n|-\n'
else
-- no taxonomy template for this taxon
return frame:expandTemplate{ title = 'Template:Create taxonomy', args = {taxon, msg='Missing taxonomy template'} } .. '\n|-\n'
end
else
-- if showing is not already forced, force if it's a principal rank or an authority is specified
force = force or frame:expandTemplate{ title = 'Template:Principal rank', args = {rank} } == 'yes' or
auth ~= ''
if not force then
-- if showing is still not already forced, force if the taxonomy template has 'always_display' set
local ok, alwaysDisplay = l.getTaxonInfoItem(frame, taxon, 'always_display')
force = alwaysDisplay == 'yes' or alwaysDisplay == 'true'
end
if force then
local res = '|' .. frame:expandTemplate{ title = 'Template:Anglicise rank', args = {rank} } .. ':'
local bold = 'no'
if boldFirst == 'bold' then bold = 'yes' end
local res = res .. '||' .. l.getTaxonLink(frame, taxon, rank, bold, '', virus)
if auth ~= '' then
res = res .. '<br><small>' .. auth .. '</small>'
end
return res .. '\n|-\n'
else
return ''
end
end
end
--[[========================== taxonomyList =================================
Returns the cells of the taxonomy table displayed on the right hand side of
"Template:Taxonomy...." pages.
Usage: {{#invoke:Autotaxobox|taxonomyList|TAXON}}
=============================================================================]]
function p.taxonomyList(frame)
local currTaxon = frame.args[1] or ''
if currTaxon == '' then return '| ||ERROR: no taxon supplied\n|-' end
local taxonTable, taxonRankTable = l.makeTable(frame, currTaxon)
local rankTable = l.getRankTable()
local lastRankVal = 1000000
local orderOk = true
local res = ''
-- check whether the taxonomy is for viruses; use already determined taxon colour if possible
local virus = 'no'
local taxoColour = colour
if taxoColour == '' then
taxoColour = frame:expandTemplate{ title = 'Template:Taxobox colour', args = { taxonTable[taxonTable.n - 1] } }
end
if taxoColour == frame:expandTemplate{ title = 'Template:Taxobox colour', args = { 'virus' } } then
virus = 'yes'
end
-- deal first with the top level taxon; if there are no errors, it should be Life/Veterovata/Ichnos, which are
-- not displayed
local taxon = taxonTable[taxonTable.n]
if not l.topLevelTaxon(taxon) then
local msg = 'Taxonomy template missing'
if mw.title.new('Taxonomy/'..taxon, 'Template').exists then
msg = 'Parent taxon needed'
end
res = res .. '\n|colspan=2|' .. frame:expandTemplate{title = 'Template:Create taxonomy', args = {taxon, msg = msg}} .. '\n|-\n'
end
-- now output the rest of the table
for i = taxonTable.n-1, 1, -1 do
-- check ranks are in right order in the hierarchy
taxon = taxonTable[i]
local rank = taxonRankTable[i]
local currRankVal = rankTable[string.lower(rank)]
if currRankVal then
orderOk = currRankVal < lastRankVal
if orderOk then lastRankVal = currRankVal end
else
orderOk = true
end
-- now return a row of the taxonomy table with anomalous ranks marked
local errorStr = ''
if not orderOk then errorStr = 'yes' end
local link = l.getTaxonLink(frame, taxon, rank, 'no', '', virus)
res = res .. '\n' .. l.taxonTableRow(frame, taxon, rank, link, errorStr)
end
-- if the last row has an anomalous rank, put the page in the error-tracking category; category statements don't work
-- inside tables, so need to close the current table first and then open a dummy one (close is in Template:Taxonomy key)
if not orderOk then
res = res .. '\n|}\n[[Category:Taxonomy templates showing anomalous ranks]]\n{|\n'
end
return res
end
--[[= = = = = = = = = = = = = = taxonTableRow = = = = = = = = = = = = = = = =
Returns a single row of the taxonomy table displayed on the right hand side
of "Template:Taxonomy...." pages.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.taxonTableRow(frame, taxon, rank, link, error)
local res = ''
if taxon == '' or rank == '' then return res end
-- if appropriate, make it clear that some taxa have been skipped
if mw.ustring.sub(taxon, -5) == '/skip' then
res = res .. '| ..... || .....\n|-\n'
end
-- now generate a line of the table, ending with '|-'
res = res .. '|'
if error == 'yes' then
res = res .. '<span style="background-color:#FDD">'
end
local anglicizedRank = frame:expandTemplate{ title = 'Template:Anglicise rank', args = { rank } }
res = res .. anglicizedRank
if error == 'yes' then
res = res .. '</span>'
end
res = res .. ':||<span class="' .. string.lower(anglicizedRank) .. '" style="white-space:nowrap;">' .. link .. '</span>' .. frame:expandTemplate{ title = 'Template:Edit a taxon', args = { taxon } } .. '\n|-'
return res
end
--[[========================= callTaxonomyKey ===============================
Prepares for, and then calls, Template:Taxonomy key to display a taxonomy
template page. It does this by building up the information the template
requires, following one 'same as' link, if required.
Usage:
{{#invoke:Autotaxobox|callTaxonomyKey
|parent=
|rank=
|extinct=
|always_display=
|link_target=value of 'link' parameter in taxonomy template
|link_text=value of parameter 2 in taxonomy template
|same_as=
}}
=============================================================================]]
local PARENT = 1
local RANK = 2
local LINK_TARGET = 3
local LINK_TEXT = 4
local ALWAYS_DISPLAY = 5
local EXTINCT = 6
local SAME_AS = 7
local REFS = 8
function p.callTaxonomyKey(frame)
local taxon = frame.args['taxon'] or ''
local parent = frame.args['parent'] or ''
local rank = frame.args['rank'] or ''
local extinct = string.lower(frame.args['extinct']) or ''
local alwaysDisplay = string.lower(frame.args['always_display']) or ''
local linkTarget = frame.args['link_target'] or ''
local linkText = frame.args['link_text'] or '' -- this is the "raw" link text, and can be ''
local refs = frame.args['refs'] or ''
local sameAsTaxon = frame.args['same_as'] or ''
if sameAsTaxon ~= '' then
-- try using the 'same as' taxon; it's an error if it doesn't exist
local ok, sameAsInfoStr = pcall(frame.expandTemplate, frame, { title = 'Template:Taxonomy/' .. sameAsTaxon, args = {['machine code'] = 'all' } })
if ok then
local sameAsInfo = mw.text.split(sameAsInfoStr, '$', true)
--'same as' taxon's taxonomy template must not have a 'same as' link
if sameAsInfo[SAME_AS] == '' then
if parent == '' then parent = sameAsInfo[PARENT] end
if rank == '' then rank = sameAsInfo[RANK] end
if extinct == '' then extinct = string.lower(sameAsInfo[EXTINCT]) end
if alwaysDisplay == '' then alwaysDisplay = string.lower(sameAsInfo[ALWAYS_DISPLAY]) end
if linkTarget == '' then linkTarget = sameAsInfo[LINK_TARGET] end
if linkText == '' then linkText = sameAsInfo[LINK_TEXT] end
if refs == '' and parent == sameAsInfo[PARENT] then refs = sameAsInfo[REFS] end
else
return '<span style="color:red; font-size:1.1em">Error: attempt to follow two "same as" links</span>: <code>same_as = ' .. sameAsTaxon .. '</code>, but [[Template:Taxonomy/' .. sameAsTaxon .. ']] also has a<code>same_as</code> parameter.'
end
else
return frame:expandTemplate{ title = 'Template:Taxonomy key/missing template', args = {taxon=sameAsTaxon, msg='given as the value of <code>same as</code>'} }
end
end
local link = linkTarget
if linkText ~= '' and linkText ~= linkTarget then link = link .. "|" .. linkText end
-- check consistency of extinct status; if this taxon is not extinct, parent must not be either
local extinctError = 'no'
if parent ~= '' and (extinct == 'no' or extinct == 'false') then
local ok, parentExtinct = l.getTaxonInfoItem(frame, parent, 'extinct')
if ok and (parentExtinct == 'yes' or parentExtinct == 'true') then extinctError = 'yes' end
end
return frame:expandTemplate{ title = 'Template:Taxonomy key',
args = {taxon=taxon, parent=parent, rank=rank, extinct=extinct, always_display=alwaysDisplay, link_target=linkTarget, link=link, refs=refs, same_as=sameAsTaxon, extinct_error = extinctError} }
end
--[[============================= showRefs ==================================
Shows the refs field in a taxonomy template, handing incertae sedis taxa and
using '–' for absent refs.
Usage: {{#invoke:Autotaxobox|showRefs|TAXON|REFS}}
=============================================================================]]
function p.showRefs(frame)
local taxonName = frame.args[1] or ''
local refs = frame.args[2] or ''
return l.doShowRefs(taxonName, refs)
end
--[[= = = = = = = = = = = = = = doShowRefs = = = = = = = = = = = = = = = = =
Show the refs field in a taxonomy template.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.doShowRefs(taxonName, refs)
if mw.text.split(taxonName, '/', true)[1] == 'Incertae sedis' then
refs = 'not applicable (<i>incertae sedis</i>)'
elseif refs == '' then
refs = '–'
end
return refs
end
--[[============================ taxonInfo ==================================
Extracts and returns information from Template:Taxonomy/TAXON, following
one 'same as' link if required.
Usage: {{#invoke:Autotaxobox|taxonInfo|TAXON|ITEM}}
ITEM is one of: 'parent', 'rank', 'link target', 'link text', 'extinct',
'always display', 'refs', 'same as' or 'all'.
If ITEM is not specified, the default is 'all' – all values in a single string
separated by '$'.
=============================================================================]]
function p.taxonInfo(frame)
local taxon = frame.args[1] or ''
local item = frame.args[2] or ''
if item == '' then item = 'all' end
local ok, info = l.getTaxonInfoItem(frame, taxon, item)
return info
end
--[[= = = = = = = = = = = getTaxonInfoItem = = = = = = = = = = = = = = = = =
Internal utility function to extract an item of information from a
taxonomy template, following one 'same as' link if required.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.getTaxonInfoItem(frame, taxon, item)
local ok, info
-- item == 'dagger' is a special case
if item == 'dagger' then
ok, info = l.getTaxonInfoItem(frame, taxon, 'extinct')
if ok then
if info == 'yes' or info == 'true' then
info = '†'
else
info = ''
end
end
-- item ~= 'dagger'
else
ok, info = pcall(frame.expandTemplate, frame, { title = 'Template:Taxonomy/' .. taxon, args = {['machine code'] = item } })
if ok then
if info == '' then
-- try 'same as'
local sameAsTaxon = frame:expandTemplate{ title = 'Template:Taxonomy/' .. taxon, args = {['machine code'] = 'same as' } }
if sameAsTaxon ~= '' then
ok, info = pcall(frame.expandTemplate, frame, { title = 'Template:Taxonomy/' .. sameAsTaxon, args = {['machine code'] = item } })
end
end
end
end
if ok then
-- if item is 'link_text', trim info and check whether '(?)' needs to be added
if item == 'link_text' then
-- there is a newline at the end of linkText when taxonomy template has "|link = LINK_TARGET|LINK_TEXT"
info = mw.text.trim(info)
if string.sub(taxon, -2) == '/?' and not string.find(info, '?', 1, true) then
info = info .. '<span style="font-style:normal;font-weight:normal;"> (?)</span>'
end
end
else
info = '[[Template:Taxonomy/' .. taxon .. ']]' --error indicator in code before conversion to Lua
end
return ok, info
end
--[[============================ taxonLink ==================================
Returns a wikilink to a taxon, if required including '†' before it and
' (?)' after it, and optionally italicized or bolded without a wikilink.
Usage:
{{#invoke:Autotaxobox|taxonLink
|taxon= : having '/?' at the end triggers the output of ' (?)'
|extinct= : 'yes' or 'true' trigger the output of '†'
|bold= : 'yes' makes the core output bold and not wikilinked
|italic= : 'yes' makes the core output italic
|link_target= : target for the wikilink
|link_text= : text of the wikilink (may be same as link_target), without †, italics, etc.
}}
=============================================================================]]
function p.taxonLink(frame)
local taxon = frame.args['taxon'] or ''
local extinct = string.lower(frame.args['extinct'] or '')
local bold = frame.args['bold'] or ''
local italic = frame.args['italic'] or ''
local linkTarget = frame.args['link_target'] or ''
local linkText = frame.args['link_text'] or frame.args['plain_link_text'] or '' --temporarily allow alternative args
return l.makeLink(taxon, extinct, bold, italic, linkTarget, linkText)
end
--[[= = = = = = = = = = = = = = getTaxonLink = = = = = = = = = = = = = = = =
Internal function to drive l.makeLink().
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.getTaxonLink(frame, taxon, rank, bold, italic, virus)
local ok, extinct = l.getTaxonInfoItem(frame, taxon, 'extinct')
if italic == '' then
italic = frame:expandTemplate{ title = 'Template:Is italic taxon', args = { rank, virus = virus } }
end
local ok, linkTarget = l.getTaxonInfoItem(frame, taxon, 'link_target')
local ok, linkText = l.getTaxonInfoItem(frame, taxon, 'link_text')
return l.makeLink(taxon, extinct, bold, italic, linkTarget, linkText)
end
--[[= = = = = = = = = = = = = = makeLink = = = = = = = = = = = = = = = = = =
Actually make the link.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.makeLink(taxon, extinct, bold, italic, linkTarget, linkText)
-- if link text is missing, try to find a replacement
if linkText == '' then
if string.find(taxon, 'Incertae sedis', 1, true) then
linkText = "''incertae sedis''"
linkTarget = 'Incertae sedis'
else
linkText = l.stripExtra(taxon)
end
end
if linkTarget == '' then linkTarget = linkText end
if italic == 'yes' then linkText = TaxonItalics.italicizeTaxonName(linkText, false) end
local link = ''
if bold == 'yes' then link = '<b>' .. linkText .. '</b>'
else
if linkTarget == linkText then link = linkText
else link = linkTarget .. '|' .. linkText
end
link = '[[' .. link .. ']]'
end
if (extinct == 'yes' or extinct == 'true') and not string.find(link, '†', 1, true) then
link = '<span style="font-style:normal;font-weight:normal;">†</span>' .. link
end
if string.sub(taxon, -2) == '/?' and not string.find(link, '?', 1, true) then
link = link .. '<span style="font-style:normal;font-weight:normal;"> (?)</span>'
end
return link
end
--[[========================== showRankTable ================================
Returns a wikitable showing the ranks and their values as set up by
getRankTable().
Usage: {{#invoke:Autotaxobox|showRankTable}}
=============================================================================]]
function p.showRankTable(frame)
local rankTable = l.getRankTable()
local res = '{| class="wikitable sortable"\n|+ Ranks checked in taxonomy templates\n! Rank !! Shown as !! Value\n'
for k, v in pairs(rankTable) do
local rankShown = frame:expandTemplate{ title = 'Template:Anglicise rank', args = { k } }
res = res .. '|-\n|' .. k .. '||' .. rankShown .. '||' .. v .. '\n'
end
return res .. '|}\n'
end
--[[============================== find =====================================
Returns the taxon above the specified taxon with a given rank.
Usage: {{#invoke:Autotaxobox|find|TAXON|RANK}}
=============================================================================]]
function p.find(frame)
local currTaxon = frame.args[1] or ''
if currTaxon == '' then return '<span class="error">no taxon supplied</span>' end
local rank = frame.args[2] or ''
if rank == '' then return '<span class="error">no rank supplied</span>' end
local inHierarchy = true -- still in the taxonomic hierarchy or off the top?
local searching = true -- still searching
while inHierarchy and searching do
local ok, parent = l.getTaxonInfoItem(frame, currTaxon, 'parent')
if ok and parent ~= '' then
currTaxon = parent
local ok, currRank = l.getTaxonInfoItem(frame, currTaxon, 'rank')
if currRank == rank then
searching = false
end
else
inHierarchy = false
end
end
if inHierarchy and not searching then return currTaxon
else return '<span class="error">rank not found</span>'
end
end
--[[=============================== nth =====================================
External utility function primarily intended for use in checking and debugging.
Returns the nth level above a taxon in a taxonomic hierarchy, where the taxon
itself is counted as the first level.
Usage: {{#invoke:Autotaxobox|nth|TAXON|n=N}}
=============================================================================]]
function p.nth(frame)
local currTaxon = frame.args[1] or ''
if currTaxon == '' then return 'ERROR: no taxon supplied' end
local n = tonumber(frame.args['n'] or 1)
if n > MaxSearchLevels then
return 'Exceeded maximum number of levels allowed (' .. MaxSearchLevels .. ')'
end
local i = 1
local inHierarchy = true -- still in the taxonomic hierarchy or off the top?
while i < n and inHierarchy do
local ok, parent = l.getTaxonInfoItem(frame, currTaxon, 'parent')
if ok and parent ~= '' then
currTaxon = parent
i = i + 1
else
inHierarchy = false
end
end
if inHierarchy then return currTaxon
else return 'Level ' .. n .. ' is past the top of the taxonomic hierarchy'
end
end
--[[============================= nLevels ===================================
External utility function primarily intended for use in checking and debugging.
Returns number of levels in a taxonomic hierarchy, starting from
the supplied taxon as level 1.
Usage: {{#invoke:Autotaxobox|nLevels|TAXON}}
=============================================================================]]
function p.nLevels(frame)
local currTaxon = frame.args[1] or ''
if currTaxon == '' then return 'ERROR: no taxon supplied' end
local i = 1
local inHierarchy = true -- still in the taxonomic hierarchy or off the top?
while inHierarchy and i < MaxSearchLevels do
local ok, parent = l.getTaxonInfoItem(frame, currTaxon, 'parent')
if ok and parent ~= '' then
currTaxon = parent
i = i + 1
else
inHierarchy = false
end
end
if inHierarchy then return MaxSearchLevels .. '+'
else return i
end
end
--[[============================= listAll ===================================
External utility function primarily intended for use in checking and debugging.
Returns a comma separated list of a taxonomic hierarchy, starting from
the supplied taxon.
Usage: {{#invoke:Autotaxobox|listAll|TAXON}}
=============================================================================]]
function p.listAll(frame)
local currTaxon = frame.args[1] or ''
if currTaxon == '' then return 'ERROR: no taxon supplied' end
return l.doListAll(l.makeTable(frame, currTaxon))
end
function l.doListAll(taxonTable, taxonRankTable)
local lst = taxonTable[1] .. '-' .. tostring(taxonRankTable[1])
for i = 2, taxonTable.n, 1 do
lst = lst .. ', ' .. taxonTable[i] .. '-' .. taxonRankTable[i]
end
return lst
end
--[[=========================================================================
Internal functions
=============================================================================]]
--[[= = = = = = = = = = = = stripExtra = = = = = = = = = = = = = = = = = = =
Internal utility function to strip off any extra parts of a taxon name, i.e.
anything after a '/'. Thus "Felidae/?" would be reduced to "Felidae".
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.stripExtra(taxonName)
local i = string.find(taxonName,'/')
if i then
return string.sub(taxonName,1,i-1)
else
return taxonName
end
end
--[[= = = = = = = = = = = = = makeTable = = = = = = = = = = = = = = = = = = =
Internal utility function to return a table (array) constructed from a
taxonomic hierarchy stored in "Template:Taxonomy/..." templates.
TABLE.n holds the total number of taxa; TABLE[1]..TABLE[TABLE.n] the taxon
names.
The last taxon in the table will either (a) have a taxonomy template but with
no parent given (e.g. 'Life') or (b) not have a taxonomy template.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.makeTable(frame, currTaxon)
local taxonTable = {}
local taxonRankTable = {}
local ok, rank, parent
local i = 1
local topReached = false -- reached the top of the taxonomic hierarchy?
repeat
taxonTable[i] = currTaxon
ok, rank = l.getTaxonInfoItem(frame, currTaxon, 'rank')
if ok then taxonRankTable[i] = rank else taxonRankTable[i] = '' end
ok, parent = l.getTaxonInfoItem(frame, currTaxon, 'parent')
if ok and parent ~= '' then
currTaxon = parent
i = i + 1
else
topReached = true -- reached the top of the hierarchy or tried to use a non-existent taxonomy template
end
until topReached or i > MaxSearchLevels
taxonTable.n = math.min(i, MaxSearchLevels)
return taxonTable, taxonRankTable
end
--[[= = = = = = = = = = = = getRankTable = = = = = = = = = = = = = = = = = =
Internal utility function to set up a table of numerical values corresponding
to 'Linnaean' ranks, with upper ranks having higher values. In a valid
taxonomic hierarchy, a lower rank should never have a higher value than a
higher rank. The actual numerical values are arbitrary so long as they are
ordered.
The ranks should correspond to those in Template:Anglicise ranks.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.getRankTable()
return {
classis = 1400,
cohort = 1100,
divisio = 1500,
domain = 1700,
familia = 800,
forma = 100,
genus = 600,
grandordo = 1005,
['grandordo-mb'] = 1002,
infraclassis = 1397,
infralegio = 1197,
infraordo = 997,
infraphylum = 1497,
infraregnum = 1597,
infratribus = 697,
legio = 1200,
magnordo = 1006,
microphylum = 1495,
micrordo = 995,
mirordo = 1004,
['mirordo-mb'] = 1001,
nanophylum = 1494,
nanordo = 994,
ordo = 1000,
parafamilia = 800,
parvclassis = 1396; -- same as subterclassis
parvordo = 996,
phylum = 1500,
regnum = 1600,
sectio = 500,
--series = 400, used too inconsistently to check
species = 300,
subclassis = 1398,
subcohort = 1098,
subdivisio = 1498,
subfamilia = 798,
subgenus = 598,
sublegio = 1198,
subordo = 998,
subphylum = 1498,
subregnum = 1598,
subsectio = 498,
subspecies = 298,
subterclassis = 1396; -- same as parvclassis
subtribus = 698,
superclassis = 1403,
supercohort = 1103,
superdivisio = 1503,
superdomain = 1703,
superfamilia = 803,
superlegio = 1203,
superordo = 1003,
superphylum = 1503,
superregnum = 1603,
supertribus = 703,
tribus = 700,
varietas = 200,
zoodivisio = 1300,
zoosectio = 900,
zoosubdivisio = 1298,
zoosubsectio = 898,
}
end
return p
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